| | Day | Time | | Opponent | Score | |
| August |
| | 28 | 7:00PM | @ | Illinois Institute of Technology | W-3-2 | |
| | 29 | 7:00PM | @ | Saint Xavier University | L-0-1 | |
| September |
| | 2 | 7:30PM | @ | Lindenwood University | W-2-1 | |
| | 6 | 1:00PM | vs. | Robert Morris College | W-5-0 | |
| | 11 | 5:15PM | @ | Saint Ambrose University | W-2-0 | |
| | 12 | 3:00PM | @ | Olivet Nazarene University | W-2-0 | |
| | 16 | 7:00PM | vs. | Missouri Valley College | T-0-0 (2OT) | |
| | 18 | 7:00PM | @ | Southern Illinois-Edwardsville | L-1-2 | |
| * | 22 | 7:00PM | vs. | William Woods | W-4-0 | |
| | 25 | 6:00PM | vs. | Bellevue University | W-3-2 | |
| * | 29 | 7:00PM | @ | Missouri Baptist | W-3-1 | |
| | at Chesterfield Valley Athletic Complex |
| October |
| * | 6 | 7:00PM | vs. | McKendree | W-1-0 | |
| | Tim Tevlin scores in 69th minute to upset No. 5 McKendree |
| * | 10 | 3:00PM | vs. | Park | W-2-1 (OT) | |
| | No. 24 ranked Columbia upsets No. 11 ranked Park in overtime. |
| * | 13 | 3:00PM | @ | Harris-Stowe | W-4-0 | |
| * | 16 | 7:00PM | vs. | Williams Baptist | W-9-0 | |
| * | 20 | 3:00PM | @ | Hannibal-LaGrange | L-3-4 | |
| | 28 | 7:00PM | vs. | Quincy University | L-1-2 | |
| November |
| | 1 | 1:00PM | @ | Truman State University | W-1-0 | |
| | 10 | 5:00PM | vs. | Hannibal-LaGrange | W-1-0 | |
| | 2009 AMC Men's Soccer Tournament -- Semifinals |
| | 13 | 6:00PM | vs. | Park | W-2-1 (OT) | |
| | American Midwest Conference Championship |
| | 21 | 4:00PM | vs. | Midland Lutheran College | W-3-0 | |
| | 2009 NAIA Men's Soccer National Tournament Opening Round |
| | 30 | 6:00PM | vs. | University of Rio Grande | L-1-2 | |